Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 AA414768-201ENSMUST00000121924 1257 ntBASIC21.59■■□□□ 1.05
Col1a1P11087 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col1a1P11087 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col1a1P11087 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC21.59■■□□□ 1.05
Col1a1P11087 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Col1a1P11087 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
Col1a1P11087 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col1a1P11087 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC21.59■■□□□ 1.05
Col1a1P11087 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col1a1P11087 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC21.58■■□□□ 1.05
Col1a1P11087 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
Col1a1P11087 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col1a1P11087 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.58■■□□□ 1.05
Col1a1P11087 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col1a1P11087 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col1a1P11087 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Col1a1P11087 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Col1a1P11087 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Col1a1P11087 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
Col1a1P11087 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col1a1P11087 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
Col1a1P11087 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col1a1P11087 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col1a1P11087 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Col1a1P11087 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col1a1P11087 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col1a1P11087 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col1a1P11087 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col1a1P11087 Gm27463-201ENSMUST00000183569 57 ntBASIC21.57■■□□□ 1.04
Col1a1P11087 Gm37805-201ENSMUST00000192612 1094 ntBASIC21.57■■□□□ 1.04
Col1a1P11087 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col1a1P11087 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Col1a1P11087 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col1a1P11087 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Col1a1P11087 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Col1a1P11087 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col1a1P11087 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col1a1P11087 Mir2861-201ENSMUST00000175539 82 ntBASIC21.56■■□□□ 1.04
Col1a1P11087 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Col1a1P11087 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col1a1P11087 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col1a1P11087 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Col1a1P11087 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Col1a1P11087 Gm10654-201ENSMUST00000098653 1633 ntBASIC21.55■■□□□ 1.04
Col1a1P11087 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 AC124603.1-201ENSMUST00000223843 308 ntBASIC21.55■■□□□ 1.04
Col1a1P11087 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col1a1P11087 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC21.55■■□□□ 1.04
Col1a1P11087 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Col1a1P11087 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col1a1P11087 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col1a1P11087 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Col1a1P11087 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col1a1P11087 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col1a1P11087 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col1a1P11087 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col1a1P11087 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC21.53■■□□□ 1.04
Col1a1P11087 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC21.53■■□□□ 1.04
Col1a1P11087 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Col1a1P11087 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Col1a1P11087 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col1a1P11087 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.53■■□□□ 1.04
Col1a1P11087 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC21.52■■□□□ 1.04
Col1a1P11087 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC21.52■■□□□ 1.04
Col1a1P11087 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC21.52■■□□□ 1.04
Col1a1P11087 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col1a1P11087 Gm44544-201ENSMUST00000207052 1844 ntBASIC21.52■■□□□ 1.04
Col1a1P11087 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col1a1P11087 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col1a1P11087 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC21.52■■□□□ 1.04
Col1a1P11087 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Col1a1P11087 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Col1a1P11087 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Col1a1P11087 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC21.52■■□□□ 1.03
Col1a1P11087 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Col1a1P11087 AC134329.2-201ENSMUST00000217897 428 ntBASIC21.52■■□□□ 1.03
Col1a1P11087 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Col1a1P11087 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.51■■□□□ 1.03
Col1a1P11087 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col1a1P11087 Golph3-202ENSMUST00000226517 2359 ntBASIC21.51■■□□□ 1.03
Col1a1P11087 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col1a1P11087 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Col1a1P11087 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col1a1P11087 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms