Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Sorbs2-209ENSMUST00000132139 4644 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 Fanci-201ENSMUST00000036865 4645 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 A630072L19Rik-202ENSMUST00000221309 1519 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Cyld-206ENSMUST00000209559 4476 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 1810018F18Rik-202ENSMUST00000189546 1447 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm44046-201ENSMUST00000203145 2678 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Vmn2r73-201ENSMUST00000077478 2556 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm11011-201ENSMUST00000109160 258 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 Rhox4d-201ENSMUST00000115175 936 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Crisp4-203ENSMUST00000115344 960 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm12883-201ENSMUST00000117867 364 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Gm12529-201ENSMUST00000119529 268 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Gm14787-201ENSMUST00000121236 388 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Gm12094-201ENSMUST00000121781 472 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Gm15345-201ENSMUST00000128240 663 ntTSL 3 BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm15788-201ENSMUST00000130123 613 ntTSL 3 BASIC5.6□□□□□ -1.51
Sdc1P18828 Cul1-203ENSMUST00000143941 530 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm16573-203ENSMUST00000162231 807 ntTSL 2 BASIC5.6□□□□□ -1.51
Sdc1P18828 Traj54-201ENSMUST00000165071 54 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Crxos-205ENSMUST00000171280 571 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm22649-201ENSMUST00000175134 298 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Gm26570-201ENSMUST00000180672 342 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Gm29008-201ENSMUST00000189387 298 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Gm34342-201ENSMUST00000192139 335 ntTSL 3 BASIC5.6□□□□□ -1.51
Sdc1P18828 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Gm43787-201ENSMUST00000197792 1037 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 U90926-202ENSMUST00000201332 524 ntAPPRIS P5 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm43263-201ENSMUST00000201619 560 ntTSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 4930557J02Rik-201ENSMUST00000202325 1075 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm43905-201ENSMUST00000204516 204 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 D830044I16Rik-205ENSMUST00000206296 845 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm3776-201ENSMUST00000217203 874 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm6989-201ENSMUST00000218409 654 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 AC165249.1-203ENSMUST00000219976 392 ntTSL 2 BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm40653-202ENSMUST00000222122 1155 ntTSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 Plac8-201ENSMUST00000031264 744 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Cox8c-201ENSMUST00000053611 458 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Olfr466-201ENSMUST00000058907 927 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
Sdc1P18828 Rps7-201ENSMUST00000074267 954 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Tcl1b2-201ENSMUST00000081379 1009 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm23238-201ENSMUST00000083007 164 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Nme7-201ENSMUST00000086028 834 ntTSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 Scn8a-202ENSMUST00000096198 1072 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Rhox4b-201ENSMUST00000096458 887 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Slc12a6-203ENSMUST00000110987 3722 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 AC154630.1-201ENSMUST00000215334 2440 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Rfx4-202ENSMUST00000060397 3534 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Pde7a-201ENSMUST00000091314 4454 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Pcdh15-217ENSMUST00000134009 3300 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Ano5-202ENSMUST00000207044 3311 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Hyal4-201ENSMUST00000031691 3269 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Mmp20-201ENSMUST00000034487 3287 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Olfr237-ps1-203ENSMUST00000216411 4115 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm10280-201ENSMUST00000212238 2006 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 C130089K02Rik-201ENSMUST00000194534 6960 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 AC130217.2-201ENSMUST00000224009 2990 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Rfc1-203ENSMUST00000203581 4689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Sdc1P18828 Gm45117-201ENSMUST00000207250 1774 ntBASIC5.6□□□□□ -1.51
Sdc1P18828 Shoc2-202ENSMUST00000169861 4065 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Etv1-202ENSMUST00000159334 3981 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 AC129308.2-203ENSMUST00000224109 2385 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm9871-203ENSMUST00000204837 1560 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Enpp2-201ENSMUST00000041591 3095 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Fcrl5-202ENSMUST00000166297 1527 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
Sdc1P18828 Vmn1r39-201ENSMUST00000226217 2258 ntAPPRIS P2 BASIC5.59□□□□□ -1.51
Sdc1P18828 Vmn1r39-204ENSMUST00000227555 2297 ntAPPRIS P2 BASIC5.59□□□□□ -1.51
Sdc1P18828 Vmn1r39-205ENSMUST00000228008 2283 ntAPPRIS ALT2 BASIC5.59□□□□□ -1.51
Sdc1P18828 AU020206-202ENSMUST00000206358 3009 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Xpo7-203ENSMUST00000226448 3663 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Pirt-201ENSMUST00000123434 4200 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm39321-201ENSMUST00000216597 2075 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Cyp2c53-ps-202ENSMUST00000175960 1370 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Tial1-211ENSMUST00000165023 2003 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
Sdc1P18828 Csn2-206ENSMUST00000197422 1329 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Ranbp17-201ENSMUST00000037522 3950 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm16409-201ENSMUST00000100510 747 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Mir181d-201ENSMUST00000102383 72 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm24334-201ENSMUST00000104210 128 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Olfr329-ps-202ENSMUST00000108823 1060 ntAPPRIS P2 BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm13542-201ENSMUST00000118484 637 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm11320-201ENSMUST00000119434 463 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm11498-201ENSMUST00000120660 949 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm9143-201ENSMUST00000120745 745 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 n-R5s47-201ENSMUST00000122516 119 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm11948-201ENSMUST00000142322 539 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Milr1-203ENSMUST00000147326 1234 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm23392-201ENSMUST00000157580 113 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm23555-201ENSMUST00000157815 135 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm44370-201ENSMUST00000175436 112 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm20616-201ENSMUST00000177262 716 ntTSL 3 BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC5.59□□□□□ -1.51
Sdc1P18828 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm2087-201ENSMUST00000188217 366 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 1700065J18Rik-202ENSMUST00000190576 387 ntTSL 3 BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm38134-201ENSMUST00000191858 1234 ntTSL 5 BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm45255-201ENSMUST00000209943 811 ntBASIC5.59□□□□□ -1.51
Sdc1P18828 Gm45627-201ENSMUST00000210130 977 ntTSL 5 BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm20751-201ENSMUST00000210260 1270 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm30808-201ENSMUST00000211166 845 ntTSL 5 BASIC5.59□□□□□ -1.51
Sdc1P18828 Gm34424-201ENSMUST00000213400 782 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 76,532 protein–RNA pairs in 93.4 ms