Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Slco1a6-201ENSMUST00000111827 2815 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Apbb1ip-201ENSMUST00000014290 2773 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Ints9-201ENSMUST00000043914 2674 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Scn1a-202ENSMUST00000094951 5946 ntTSL 5 BASIC8.41□□□□□ -1.06
Traf1P39428 Gm37552-201ENSMUST00000193939 2520 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Slco6b1-201ENSMUST00000167383 2492 ntTSL 2 BASIC8.41□□□□□ -1.06
Traf1P39428 Gm28431-201ENSMUST00000185592 2166 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Gm28681-201ENSMUST00000187387 2166 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Adh7-201ENSMUST00000090171 3432 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Gm15097-201ENSMUST00000101180 2029 ntAPPRIS P2 TSL 5 BASIC8.41□□□□□ -1.06
Traf1P39428 Gm15127-201ENSMUST00000101186 2026 ntAPPRIS P2 TSL 5 BASIC8.41□□□□□ -1.06
Traf1P39428 Gm15091-201ENSMUST00000112740 2026 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Traf1P39428 Gm15107-201ENSMUST00000112796 2028 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Traf1P39428 Gm15080-201ENSMUST00000112804 2029 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Gm15109-201ENSMUST00000133085 2026 ntBASIC8.41□□□□□ -1.06
Traf1P39428 Gm20706-201ENSMUST00000175985 2023 ntBASIC8.41□□□□□ -1.06
Traf1P39428 Ott-201ENSMUST00000177554 2028 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Ott-202ENSMUST00000177606 2028 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Traf1P39428 Gm15085-201ENSMUST00000178169 2028 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
Traf1P39428 Ott-203ENSMUST00000179348 2028 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
Traf1P39428 Gm26849-201ENSMUST00000180561 1842 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Traf1P39428 Rasgef1b-210ENSMUST00000209346 3028 ntTSL 5 BASIC8.4□□□□□ -1.06
Traf1P39428 Vmn1r196-202ENSMUST00000226245 5312 ntAPPRIS ALT2 BASIC8.4□□□□□ -1.06
Traf1P39428 Rgs4-201ENSMUST00000027991 2941 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Traf1P39428 Glyat-201ENSMUST00000044976 2822 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Traf1P39428 Gm43168-201ENSMUST00000201039 1612 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Gm26555-202ENSMUST00000180882 3726 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Traf1P39428 Gm10259-201ENSMUST00000091289 1590 ntBASIC8.4□□□□□ -1.06
Traf1P39428 A630072L19Rik-202ENSMUST00000221309 1519 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Traf1P39428 Oxsm-203ENSMUST00000112625 3434 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Traf1P39428 Pramef20-201ENSMUST00000121109 1434 ntAPPRIS P1 TSL 5 BASIC8.4□□□□□ -1.06
Traf1P39428 Gm43099-201ENSMUST00000198943 5241 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Fmr1-204ENSMUST00000114655 4199 ntAPPRIS P5 TSL 5 BASIC8.4□□□□□ -1.06
Traf1P39428 Gip-201ENSMUST00000103156 607 ntAPPRIS P1 TSL 5 BASIC8.4□□□□□ -1.06
Traf1P39428 Trbv1-201ENSMUST00000103262 417 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Traf1P39428 Ighv11-2-201ENSMUST00000103468 461 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Traf1P39428 Gm13030-201ENSMUST00000105805 655 ntAPPRIS P1 TSL 3 BASIC8.4□□□□□ -1.06
Traf1P39428 Gm14728-201ENSMUST00000122196 492 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Gm5656-201ENSMUST00000171020 1096 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Krtap11-1-201ENSMUST00000171542 1008 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Traf1P39428 Gm17786-201ENSMUST00000182000 427 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Gm18501-201ENSMUST00000185363 664 ntBASIC8.4□□□□□ -1.06
Traf1P39428 C730036E19Rik-201ENSMUST00000188305 1102 ntTSL 5 BASIC8.4□□□□□ -1.06
Traf1P39428 Trbv9-201ENSMUST00000194494 290 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Igkv4-77-201ENSMUST00000199410 352 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Gm18559-201ENSMUST00000208249 604 ntBASIC8.4□□□□□ -1.06
Traf1P39428 E230029C05Rik-204ENSMUST00000208266 875 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Traf1P39428 Gm45864-201ENSMUST00000211965 1019 ntTSL 2 BASIC8.4□□□□□ -1.06
Traf1P39428 Gm45725-201ENSMUST00000212962 337 ntBASIC8.4□□□□□ -1.06
Traf1P39428 CT030182.4-201ENSMUST00000223647 645 ntBASIC8.4□□□□□ -1.06
Traf1P39428 AC115304.1-202ENSMUST00000226850 837 ntBASIC8.4□□□□□ -1.06
Traf1P39428 CT025630.2-201ENSMUST00000228293 487 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Cfap126-201ENSMUST00000027959 1034 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
Traf1P39428 Olfr1361-201ENSMUST00000055615 954 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Traf1P39428 Cbx3-ps4-201ENSMUST00000091531 549 ntBASIC8.4□□□□□ -1.06
Traf1P39428 AC122263.1-201ENSMUST00000228636 2805 ntBASIC8.4□□□□□ -1.06
Traf1P39428 Zfp870-202ENSMUST00000228075 5222 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Traf1P39428 Olfr1294-202ENSMUST00000208675 1983 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
Traf1P39428 Mccc1os-201ENSMUST00000124469 3353 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
Traf1P39428 B3gnt5-207ENSMUST00000164397 4872 ntAPPRIS P1 TSL 5 BASIC8.4□□□□□ -1.07
Traf1P39428 Prkacb-204ENSMUST00000106138 3999 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
Traf1P39428 4930505O20Rik-201ENSMUST00000142188 1758 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
Traf1P39428 Tshr-202ENSMUST00000021346 4311 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
Traf1P39428 Nck1-201ENSMUST00000112874 1513 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Olfr1508-202ENSMUST00000206520 5791 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
Traf1P39428 6720489N17Rik-203ENSMUST00000223338 1457 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
Traf1P39428 Sorbs2-202ENSMUST00000067107 5597 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Mbd5-202ENSMUST00000112745 6037 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Gm20767-202ENSMUST00000225683 1427 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
Traf1P39428 Cylc1-202ENSMUST00000210720 1969 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
Traf1P39428 Stt3a-201ENSMUST00000120381 5867 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Pus7-204ENSMUST00000131992 3645 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Cyfip1-203ENSMUST00000163845 4178 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Adgrl3-211ENSMUST00000120128 6370 ntTSL 5 BASIC8.39□□□□□ -1.07
Traf1P39428 4921539H07Rik-201ENSMUST00000197200 2985 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Ctnnd1-201ENSMUST00000036811 5126 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Osbpl9-201ENSMUST00000030288 2871 ntAPPRIS ALT1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Cxcr4-201ENSMUST00000052172 1805 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 E230015B07Rik-202ENSMUST00000159884 2822 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 Gm25344-201ENSMUST00000104503 132 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Smim8-205ENSMUST00000108134 782 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
Traf1P39428 Gm6743-201ENSMUST00000117345 1066 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Gm12879-201ENSMUST00000120003 1182 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Gm12477-201ENSMUST00000121221 571 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Mir7084-201ENSMUST00000183876 70 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Mir378d-201ENSMUST00000184232 110 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Gm18699-201ENSMUST00000190713 243 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Ighv1-73-201ENSMUST00000197435 352 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Gm19764-201ENSMUST00000203630 649 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Gm44712-201ENSMUST00000206250 1076 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Gm44508-201ENSMUST00000206943 1157 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Gm6213-201ENSMUST00000209966 638 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Traf1P39428 AC151901.1-201ENSMUST00000218274 180 ntBASIC8.39□□□□□ -1.07
Traf1P39428 AC151904.2-201ENSMUST00000218683 1177 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Gm7712-201ENSMUST00000222214 337 ntTSL 5 BASIC8.39□□□□□ -1.07
Traf1P39428 AL837512.1-201ENSMUST00000223914 1073 ntBASIC8.39□□□□□ -1.07
Traf1P39428 AC131033.1-201ENSMUST00000228223 279 ntBASIC8.39□□□□□ -1.07
Traf1P39428 AC137950.3-201ENSMUST00000228250 246 ntBASIC8.39□□□□□ -1.07
Traf1P39428 AC154627.1-201ENSMUST00000228799 1286 ntBASIC8.39□□□□□ -1.07
Traf1P39428 Olfr491-201ENSMUST00000053179 933 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
Retrieved 100 of 76,532 protein–RNA pairs in 78.4 ms