Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Prpf40aQ9R1C7 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Prpf40aQ9R1C7 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Prpf40aQ9R1C7 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Gm7291-201ENSMUST00000199147 382 ntBASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Prpf40aQ9R1C7 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Prpf40aQ9R1C7 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Gm6420-201ENSMUST00000193885 723 ntBASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Prpf40aQ9R1C7 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Prpf40aQ9R1C7 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Prpf40aQ9R1C7 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Prpf40aQ9R1C7 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Prpf40aQ9R1C7 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Prpf40aQ9R1C7 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Prpf40aQ9R1C7 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.14■□□□□ 0.81
Prpf40aQ9R1C7 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.14■□□□□ 0.81
Prpf40aQ9R1C7 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms