Protein–RNA interactions for Protein: Q9D2H5

Trim42, Tripartite motif-containing protein 42, mousemouse

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim42Q9D2H5 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim42Q9D2H5 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Gm22238-201ENSMUST00000175222 88 ntBASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim42Q9D2H5 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Trim42Q9D2H5 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim42Q9D2H5 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim42Q9D2H5 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.33■□□□□ 0.53
Trim42Q9D2H5 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim42Q9D2H5 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim42Q9D2H5 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.32■□□□□ 0.52
Trim42Q9D2H5 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim42Q9D2H5 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim42Q9D2H5 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim42Q9D2H5 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.28■□□□□ 0.52
Trim42Q9D2H5 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim42Q9D2H5 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.28■□□□□ 0.52
Trim42Q9D2H5 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms