Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.2■□□□□ 0.66
Pcdha1Q91Y21 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha1Q91Y21 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Pcdha1Q91Y21 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Pcdha1Q91Y21 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Gm12896-201ENSMUST00000118430 226 ntBASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdha1Q91Y21 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Gm27275-201ENSMUST00000184318 272 ntBASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.18■□□□□ 0.66
Pcdha1Q91Y21 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Gm44549-201ENSMUST00000208351 577 ntBASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdha1Q91Y21 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Gm2559-201ENSMUST00000201323 363 ntBASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Dio3-201ENSMUST00000097228 1449 ntBASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdha1Q91Y21 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.15■□□□□ 0.66
Pcdha1Q91Y21 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Pcdha1Q91Y21 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.14■□□□□ 0.66
Pcdha1Q91Y21 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Pcdha1Q91Y21 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdha1Q91Y21 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms