Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Clrn1Q8K445 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Clrn1Q8K445 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Clrn1Q8K445 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.39■□□□□ 0.37
Clrn1Q8K445 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.39■□□□□ 0.37
Clrn1Q8K445 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Clrn1Q8K445 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Clrn1Q8K445 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Clrn1Q8K445 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.37■□□□□ 0.37
Clrn1Q8K445 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Clrn1Q8K445 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Clrn1Q8K445 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Gm27405-201ENSMUST00000184201 112 ntBASIC17.35■□□□□ 0.37
Clrn1Q8K445 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Clrn1Q8K445 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clrn1Q8K445 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Clrn1Q8K445 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Clrn1Q8K445 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Clrn1Q8K445 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms