Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Shroom3-211ENSMUST00000225438 5742 ntBASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps53Q8CCB4 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Vps53Q8CCB4 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Rncr4-201ENSMUST00000194541 2234 ntBASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps53Q8CCB4 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Gm7860-201ENSMUST00000121190 879 ntBASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vps53Q8CCB4 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Gm38205-201ENSMUST00000192243 258 ntBASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Vps53Q8CCB4 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Gm43859-201ENSMUST00000200075 1412 ntBASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Gm6420-201ENSMUST00000193885 723 ntBASIC21.33■■□□□ 1.01
Vps53Q8CCB4 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms