Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Gm10138-203ENSMUST00000206952 366 ntBASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
Usp40Q8BWR4 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.64
Usp40Q8BWR4 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC25.33■■□□□ 1.64
Usp40Q8BWR4 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
Usp40Q8BWR4 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Usp40Q8BWR4 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Usp40Q8BWR4 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
Usp40Q8BWR4 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC25.32■■□□□ 1.64
Usp40Q8BWR4 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
Usp40Q8BWR4 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Usp40Q8BWR4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Usp40Q8BWR4 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC25.31■■□□□ 1.64
Usp40Q8BWR4 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Gm15565-201ENSMUST00000118890 427 ntBASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Krtap5-1-202ENSMUST00000188274 742 ntBASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 AC175538.1-201ENSMUST00000225343 1269 ntBASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
Usp40Q8BWR4 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC25.3■■□□□ 1.64
Usp40Q8BWR4 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Rncr4-201ENSMUST00000194541 2234 ntBASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Gm45560-201ENSMUST00000211492 1472 ntBASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Gm43183-201ENSMUST00000200632 547 ntBASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Usp40Q8BWR4 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Gm15375-201ENSMUST00000119510 849 ntBASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Usp40Q8BWR4 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Mir5122-201ENSMUST00000175004 89 ntBASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Usp40Q8BWR4 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Usp40Q8BWR4 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Usp40Q8BWR4 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Usp40Q8BWR4 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Usp40Q8BWR4 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Usp40Q8BWR4 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Usp40Q8BWR4 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms