Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Gm13158-201ENSMUST00000122007 736 ntBASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ubfd1Q78JW9 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
Ubfd1Q78JW9 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.89■□□□□ 0.46
Ubfd1Q78JW9 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
Ubfd1Q78JW9 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Ubfd1Q78JW9 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.89■□□□□ 0.46
Ubfd1Q78JW9 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Gm11927-201ENSMUST00000118472 759 ntBASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
Ubfd1Q78JW9 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ubfd1Q78JW9 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Gm43545-201ENSMUST00000196765 2779 ntBASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.87■□□□□ 0.45
Ubfd1Q78JW9 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ubfd1Q78JW9 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Zfp783-201ENSMUST00000095946 670 ntBASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ubfd1Q78JW9 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Ubfd1Q78JW9 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ubfd1Q78JW9 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.84■□□□□ 0.45
Ubfd1Q78JW9 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.84■□□□□ 0.45
Ubfd1Q78JW9 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ubfd1Q78JW9 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms