Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rtl3Q6P1Y1 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Gm26524-201ENSMUST00000192339 390 ntBASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Gm10616-201ENSMUST00000205285 2127 ntBASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rtl3Q6P1Y1 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rtl3Q6P1Y1 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Gm8520-201ENSMUST00000186517 868 ntBASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rtl3Q6P1Y1 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Gm8309-201ENSMUST00000206627 1448 ntBASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Rtl3Q6P1Y1 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.96■□□□□ 0.63
Rtl3Q6P1Y1 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Rtl3Q6P1Y1 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rtl3Q6P1Y1 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.96■□□□□ 0.63
Rtl3Q6P1Y1 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.96■□□□□ 0.63
Rtl3Q6P1Y1 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Rtl3Q6P1Y1 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rtl3Q6P1Y1 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rtl3Q6P1Y1 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Rtl3Q6P1Y1 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms