Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim28Q62318 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim28Q62318 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Trim28Q62318 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC24.05■■□□□ 1.44
Trim28Q62318 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC24.05■■□□□ 1.44
Trim28Q62318 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
Trim28Q62318 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim28Q62318 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim28Q62318 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
Trim28Q62318 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim28Q62318 CT010444.2-201ENSMUST00000217877 1629 ntBASIC24.04■■□□□ 1.44
Trim28Q62318 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC24.04■■□□□ 1.44
Trim28Q62318 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim28Q62318 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim28Q62318 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC24.04■■□□□ 1.44
Trim28Q62318 Gm45560-201ENSMUST00000211492 1472 ntBASIC24.04■■□□□ 1.44
Trim28Q62318 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
Trim28Q62318 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim28Q62318 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Trim28Q62318 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim28Q62318 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim28Q62318 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
Trim28Q62318 Gm9194-201ENSMUST00000220749 1447 ntBASIC24.03■■□□□ 1.44
Trim28Q62318 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim28Q62318 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC24.03■■□□□ 1.44
Trim28Q62318 Gm15375-201ENSMUST00000119510 849 ntBASIC24.03■■□□□ 1.44
Trim28Q62318 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Trim28Q62318 Gm6576-201ENSMUST00000169678 883 ntBASIC24.03■■□□□ 1.44
Trim28Q62318 Gm29241-201ENSMUST00000189260 1096 ntBASIC24.03■■□□□ 1.44
Trim28Q62318 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
Trim28Q62318 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Trim28Q62318 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 AC121961.1-201ENSMUST00000218594 1779 ntBASIC24.02■■□□□ 1.44
Trim28Q62318 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 Gm715-201ENSMUST00000117865 831 ntBASIC24.02■■□□□ 1.44
Trim28Q62318 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
Trim28Q62318 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC24.02■■□□□ 1.44
Trim28Q62318 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC24.02■■□□□ 1.44
Trim28Q62318 Arhgef33-211ENSMUST00000225658 473 ntBASIC24.02■■□□□ 1.44
Trim28Q62318 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
Trim28Q62318 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Trim28Q62318 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim28Q62318 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim28Q62318 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
Trim28Q62318 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Trim28Q62318 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC24.01■■□□□ 1.43
Trim28Q62318 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC24.01■■□□□ 1.43
Trim28Q62318 AC175538.1-201ENSMUST00000225343 1269 ntBASIC24.01■■□□□ 1.43
Trim28Q62318 Gm38345-201ENSMUST00000192635 1748 ntBASIC24.01■■□□□ 1.43
Trim28Q62318 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Trim28Q62318 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC24■■□□□ 1.43
Trim28Q62318 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC24■■□□□ 1.43
Trim28Q62318 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
Trim28Q62318 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim28Q62318 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim28Q62318 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Trim28Q62318 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC24■■□□□ 1.43
Trim28Q62318 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC24■■□□□ 1.43
Trim28Q62318 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC24■■□□□ 1.43
Trim28Q62318 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC24■■□□□ 1.43
Trim28Q62318 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC24■■□□□ 1.43
Trim28Q62318 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC24■■□□□ 1.43
Trim28Q62318 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC24■■□□□ 1.43
Trim28Q62318 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC24■■□□□ 1.43
Trim28Q62318 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trim28Q62318 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC23.99■■□□□ 1.43
Trim28Q62318 Gm38308-201ENSMUST00000194934 1809 ntBASIC23.99■■□□□ 1.43
Trim28Q62318 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC23.99■■□□□ 1.43
Trim28Q62318 Gm18025-201ENSMUST00000221733 862 ntBASIC23.99■■□□□ 1.43
Trim28Q62318 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Trim28Q62318 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trim28Q62318 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trim28Q62318 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim28Q62318 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Trim28Q62318 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Trim28Q62318 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim28Q62318 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
Trim28Q62318 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC23.98■■□□□ 1.43
Trim28Q62318 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Trim28Q62318 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim28Q62318 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim28Q62318 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trim28Q62318 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Trim28Q62318 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC23.97■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms