Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.18■□□□□ 0.82
CtcfQ61164 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CtcfQ61164 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.18■□□□□ 0.82
CtcfQ61164 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
CtcfQ61164 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CtcfQ61164 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CtcfQ61164 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CtcfQ61164 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CtcfQ61164 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.17■□□□□ 0.82
CtcfQ61164 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CtcfQ61164 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CtcfQ61164 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.17■□□□□ 0.82
CtcfQ61164 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.17■□□□□ 0.82
CtcfQ61164 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CtcfQ61164 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CtcfQ61164 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.17■□□□□ 0.82
CtcfQ61164 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.17■□□□□ 0.82
CtcfQ61164 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.17■□□□□ 0.82
CtcfQ61164 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CtcfQ61164 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CtcfQ61164 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.16■□□□□ 0.82
CtcfQ61164 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CtcfQ61164 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.16■□□□□ 0.82
CtcfQ61164 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CtcfQ61164 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.16■□□□□ 0.82
CtcfQ61164 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CtcfQ61164 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.15■□□□□ 0.82
CtcfQ61164 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CtcfQ61164 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CtcfQ61164 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.14■□□□□ 0.81
CtcfQ61164 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.14■□□□□ 0.81
CtcfQ61164 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CtcfQ61164 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CtcfQ61164 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CtcfQ61164 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.14■□□□□ 0.81
CtcfQ61164 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CtcfQ61164 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.14■□□□□ 0.81
CtcfQ61164 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CtcfQ61164 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CtcfQ61164 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CtcfQ61164 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CtcfQ61164 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CtcfQ61164 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CtcfQ61164 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CtcfQ61164 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CtcfQ61164 Gm43060-201ENSMUST00000200621 289 ntBASIC20.12■□□□□ 0.81
CtcfQ61164 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CtcfQ61164 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CtcfQ61164 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CtcfQ61164 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CtcfQ61164 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms