Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim40Q3UWA4 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim40Q3UWA4 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Trim40Q3UWA4 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.21■□□□□ 0.35
Trim40Q3UWA4 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trim40Q3UWA4 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Golgb1-201ENSMUST00000023534 498 ntBASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
Trim40Q3UWA4 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim40Q3UWA4 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim40Q3UWA4 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms