Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm9870-201ENSMUST00000063874 645 ntBASIC19.06■□□□□ 0.64
Rnf40Q3U319 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rnf40Q3U319 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Rnf40Q3U319 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Rnf40Q3U319 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Rnf40Q3U319 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rnf40Q3U319 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.06■□□□□ 0.64
Rnf40Q3U319 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
Rnf40Q3U319 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Rnf40Q3U319 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Rnf40Q3U319 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.05■□□□□ 0.64
Rnf40Q3U319 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
Rnf40Q3U319 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.04■□□□□ 0.64
Rnf40Q3U319 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.04■□□□□ 0.64
Rnf40Q3U319 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Rnf40Q3U319 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rnf40Q3U319 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.02■□□□□ 0.64
Rnf40Q3U319 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rnf40Q3U319 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.02■□□□□ 0.64
Rnf40Q3U319 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Rnf40Q3U319 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.02■□□□□ 0.63
Rnf40Q3U319 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC19.02■□□□□ 0.63
Rnf40Q3U319 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Rnf40Q3U319 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Rnf40Q3U319 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Rnf40Q3U319 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Gm15743-202ENSMUST00000182690 1901 ntBASIC19■□□□□ 0.63
Rnf40Q3U319 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
Rnf40Q3U319 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19■□□□□ 0.63
Rnf40Q3U319 Serp2-204ENSMUST00000228055 705 ntBASIC19■□□□□ 0.63
Rnf40Q3U319 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Rnf40Q3U319 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Rnf40Q3U319 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms