Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC14.8□□□□□ -0.04
Cdx1P18111 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC14.8□□□□□ -0.04
Cdx1P18111 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Cdx1P18111 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Cdx1P18111 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
Cdx1P18111 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC14.79□□□□□ -0.04
Cdx1P18111 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Gm8493-201ENSMUST00000196881 489 ntBASIC14.79□□□□□ -0.04
Cdx1P18111 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Cdx1P18111 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cdx1P18111 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC14.79□□□□□ -0.04
Cdx1P18111 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Gm18688-201ENSMUST00000204695 1859 ntBASIC14.78□□□□□ -0.04
Cdx1P18111 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Cdx1P18111 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Wdr70-203ENSMUST00000227371 1130 ntBASIC14.78□□□□□ -0.04
Cdx1P18111 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC14.78□□□□□ -0.04
Cdx1P18111 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Cdx1P18111 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdx1P18111 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC14.77□□□□□ -0.04
Cdx1P18111 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Cdx1P18111 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdx1P18111 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdx1P18111 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Cdx1P18111 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdx1P18111 Gm43017-201ENSMUST00000198296 752 ntBASIC14.77□□□□□ -0.05
Cdx1P18111 Gm5297-201ENSMUST00000198555 1171 ntBASIC14.77□□□□□ -0.05
Cdx1P18111 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC14.77□□□□□ -0.05
Cdx1P18111 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdx1P18111 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdx1P18111 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdx1P18111 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC14.77□□□□□ -0.05
Cdx1P18111 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdx1P18111 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Cdx1P18111 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.77□□□□□ -0.05
Cdx1P18111 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Cdx1P18111 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC14.76□□□□□ -0.05
Cdx1P18111 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
Cdx1P18111 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC14.76□□□□□ -0.05
Cdx1P18111 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Cdx1P18111 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC14.76□□□□□ -0.05
Cdx1P18111 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Cdx1P18111 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Cdx1P18111 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC14.76□□□□□ -0.05
Cdx1P18111 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
Cdx1P18111 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Cdx1P18111 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Cdx1P18111 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Cdx1P18111 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC14.75□□□□□ -0.05
Cdx1P18111 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
Cdx1P18111 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms