Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Msx1P13297 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.41■□□□□ 0.38
Msx1P13297 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Msx1P13297 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Msx1P13297 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Msx1P13297 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Msx1P13297 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Msx1P13297 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.4■□□□□ 0.38
Msx1P13297 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Msx1P13297 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.4■□□□□ 0.38
Msx1P13297 Gm27275-201ENSMUST00000184318 272 ntBASIC17.4■□□□□ 0.38
Msx1P13297 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.4■□□□□ 0.38
Msx1P13297 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Gm5784-201ENSMUST00000179344 2478 ntBASIC17.4■□□□□ 0.38
Msx1P13297 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Msx1P13297 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Msx1P13297 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Msx1P13297 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Msx1P13297 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.39■□□□□ 0.37
Msx1P13297 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Msx1P13297 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Msx1P13297 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Msx1P13297 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Msx1P13297 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC17.38■□□□□ 0.37
Msx1P13297 Gm6576-201ENSMUST00000169678 883 ntBASIC17.38■□□□□ 0.37
Msx1P13297 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.38■□□□□ 0.37
Msx1P13297 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.38■□□□□ 0.37
Msx1P13297 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Msx1P13297 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Msx1P13297 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Msx1P13297 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Msx1P13297 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Msx1P13297 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.37■□□□□ 0.37
Msx1P13297 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Msx1P13297 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Msx1P13297 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Msx1P13297 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.37■□□□□ 0.37
Msx1P13297 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Msx1P13297 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Msx1P13297 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
Msx1P13297 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
Msx1P13297 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Msx1P13297 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Msx1P13297 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Msx1P13297 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Msx1P13297 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.37■□□□□ 0.37
Msx1P13297 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Msx1P13297 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Msx1P13297 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Golph3-205ENSMUST00000228671 2842 ntBASIC17.36■□□□□ 0.37
Msx1P13297 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Msx1P13297 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC17.36■□□□□ 0.37
Msx1P13297 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Msx1P13297 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Msx1P13297 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Msx1P13297 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Msx1P13297 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Msx1P13297 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Msx1P13297 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms