Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.32■□□□□ 0.36
Lire1P11260 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lire1P11260 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Lire1P11260 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Lire1P11260 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Lire1P11260 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC17.31■□□□□ 0.36
Lire1P11260 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Lire1P11260 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Lire1P11260 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.31■□□□□ 0.36
Lire1P11260 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Lire1P11260 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC17.31■□□□□ 0.36
Lire1P11260 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lire1P11260 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lire1P11260 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.3■□□□□ 0.36
Lire1P11260 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.3■□□□□ 0.36
Lire1P11260 Gm27011-201ENSMUST00000182352 972 ntBASIC17.3■□□□□ 0.36
Lire1P11260 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.3■□□□□ 0.36
Lire1P11260 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lire1P11260 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lire1P11260 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lire1P11260 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lire1P11260 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lire1P11260 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lire1P11260 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lire1P11260 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
Lire1P11260 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lire1P11260 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lire1P11260 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.29■□□□□ 0.36
Lire1P11260 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lire1P11260 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
Lire1P11260 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Lire1P11260 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.29■□□□□ 0.36
Lire1P11260 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.29■□□□□ 0.36
Lire1P11260 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.29■□□□□ 0.36
Lire1P11260 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lire1P11260 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.29■□□□□ 0.36
Lire1P11260 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Lire1P11260 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.29■□□□□ 0.36
Lire1P11260 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Lire1P11260 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.28■□□□□ 0.36
Lire1P11260 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.28■□□□□ 0.36
Lire1P11260 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lire1P11260 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lire1P11260 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lire1P11260 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.27■□□□□ 0.36
Lire1P11260 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.27■□□□□ 0.36
Lire1P11260 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.27■□□□□ 0.36
Lire1P11260 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC17.27■□□□□ 0.36
Lire1P11260 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lire1P11260 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Lire1P11260 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.27■□□□□ 0.36
Lire1P11260 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lire1P11260 Gm37811-201ENSMUST00000192416 2601 ntBASIC17.27■□□□□ 0.35
Lire1P11260 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lire1P11260 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lire1P11260 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms