Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Hoxd3P09027 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hoxd3P09027 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Hoxd3P09027 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Hoxd3P09027 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC14.27□□□□□ -0.13
Hoxd3P09027 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Hoxd3P09027 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hoxd3P09027 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hoxd3P09027 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Hoxd3P09027 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Hoxd3P09027 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Hoxd3P09027 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC14.27□□□□□ -0.13
Hoxd3P09027 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Hoxd3P09027 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC14.26□□□□□ -0.13
Hoxd3P09027 AC135637.1-201ENSMUST00000227750 365 ntBASIC14.26□□□□□ -0.13
Hoxd3P09027 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Gm5112-201ENSMUST00000204407 2368 ntBASIC14.26□□□□□ -0.13
Hoxd3P09027 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Hoxd3P09027 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Hoxd3P09027 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Hoxd3P09027 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC14.25□□□□□ -0.13
Hoxd3P09027 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hoxd3P09027 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Hoxd3P09027 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hoxd3P09027 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Hoxd3P09027 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC14.25□□□□□ -0.13
Hoxd3P09027 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC14.25□□□□□ -0.13
Hoxd3P09027 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hoxd3P09027 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hoxd3P09027 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hoxd3P09027 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hoxd3P09027 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hoxd3P09027 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hoxd3P09027 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Hoxd3P09027 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC14.24□□□□□ -0.13
Hoxd3P09027 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC14.24□□□□□ -0.13
Hoxd3P09027 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Hoxd3P09027 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Gm37856-201ENSMUST00000191634 999 ntBASIC14.24□□□□□ -0.13
Hoxd3P09027 Trmt13-210ENSMUST00000198454 880 ntBASIC14.24□□□□□ -0.13
Hoxd3P09027 Gm2559-201ENSMUST00000201323 363 ntBASIC14.24□□□□□ -0.13
Hoxd3P09027 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Hsf1-204ENSMUST00000226872 2104 ntBASIC14.24□□□□□ -0.13
Hoxd3P09027 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hoxd3P09027 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Hoxd3P09027 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Gm12896-201ENSMUST00000118430 226 ntBASIC14.23□□□□□ -0.13
Hoxd3P09027 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC14.23□□□□□ -0.13
Hoxd3P09027 Gm8520-201ENSMUST00000186517 868 ntBASIC14.23□□□□□ -0.13
Hoxd3P09027 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hoxd3P09027 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC14.22□□□□□ -0.13
Hoxd3P09027 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC14.22□□□□□ -0.13
Hoxd3P09027 Dapk1-207ENSMUST00000226059 5009 ntBASIC14.22□□□□□ -0.13
Hoxd3P09027 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hoxd3P09027 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC14.22□□□□□ -0.13
Hoxd3P09027 Gm44549-201ENSMUST00000208351 577 ntBASIC14.22□□□□□ -0.13
Hoxd3P09027 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hoxd3P09027 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hoxd3P09027 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hoxd3P09027 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hoxd3P09027 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hoxd3P09027 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hoxd3P09027 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Hoxd3P09027 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Hoxd3P09027 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms