Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cldn1O88551 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cldn1O88551 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cldn1O88551 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cldn1O88551 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Cldn1O88551 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Cldn1O88551 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC15.73■□□□□ 0.11
Cldn1O88551 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Cldn1O88551 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Cldn1O88551 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cldn1O88551 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Gm5112-201ENSMUST00000204407 2368 ntBASIC15.72■□□□□ 0.11
Cldn1O88551 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC15.72■□□□□ 0.11
Cldn1O88551 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC15.72■□□□□ 0.11
Cldn1O88551 H2-K2-201ENSMUST00000174250 1049 ntBASIC15.72■□□□□ 0.11
Cldn1O88551 Gm10231-201ENSMUST00000181584 441 ntBASIC15.72■□□□□ 0.11
Cldn1O88551 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC15.72■□□□□ 0.11
Cldn1O88551 Gm10175-202ENSMUST00000208752 441 ntBASIC15.72■□□□□ 0.11
Cldn1O88551 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC15.72■□□□□ 0.11
Cldn1O88551 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cldn1O88551 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Cldn1O88551 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC15.71■□□□□ 0.11
Cldn1O88551 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Gm10819-201ENSMUST00000099988 561 ntBASIC15.71■□□□□ 0.11
Cldn1O88551 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cldn1O88551 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
Cldn1O88551 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC15.71■□□□□ 0.1
Cldn1O88551 Gm10167-201ENSMUST00000150411 1479 ntBASIC15.71■□□□□ 0.1
Cldn1O88551 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Cldn1O88551 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC15.7■□□□□ 0.1
Cldn1O88551 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Gm37035-201ENSMUST00000194809 2148 ntBASIC15.7■□□□□ 0.1
Cldn1O88551 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Cldn1O88551 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC15.7■□□□□ 0.1
Cldn1O88551 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Cldn1O88551 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Cldn1O88551 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
Cldn1O88551 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Cldn1O88551 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Cldn1O88551 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC15.69■□□□□ 0.1
Cldn1O88551 Mir5122-201ENSMUST00000175004 89 ntBASIC15.69■□□□□ 0.1
Cldn1O88551 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC15.69■□□□□ 0.1
Cldn1O88551 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cldn1O88551 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cldn1O88551 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cldn1O88551 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Cldn1O88551 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC15.68■□□□□ 0.1
Cldn1O88551 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms