Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.6■□□□□ 0.41
Clk4O35493 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.6■□□□□ 0.41
Clk4O35493 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Clk4O35493 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk4O35493 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Clk4O35493 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
Clk4O35493 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk4O35493 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.59■□□□□ 0.41
Clk4O35493 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.59■□□□□ 0.41
Clk4O35493 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Clk4O35493 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Clk4O35493 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Clk4O35493 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Clk4O35493 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Clk4O35493 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Clk4O35493 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Clk4O35493 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.58■□□□□ 0.4
Clk4O35493 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk4O35493 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Clk4O35493 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk4O35493 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk4O35493 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.58■□□□□ 0.4
Clk4O35493 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.58■□□□□ 0.4
Clk4O35493 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk4O35493 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.58■□□□□ 0.4
Clk4O35493 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk4O35493 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk4O35493 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Clk4O35493 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Clk4O35493 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk4O35493 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk4O35493 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
Clk4O35493 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Clk4O35493 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Clk4O35493 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk4O35493 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.57■□□□□ 0.4
Clk4O35493 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk4O35493 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk4O35493 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Clk4O35493 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.57■□□□□ 0.4
Clk4O35493 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk4O35493 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Clk4O35493 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Clk4O35493 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk4O35493 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk4O35493 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk4O35493 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Clk4O35493 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.56■□□□□ 0.4
Clk4O35493 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
Clk4O35493 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Clk4O35493 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk4O35493 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Clk4O35493 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Clk4O35493 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Clk4O35493 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Clk4O35493 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.55■□□□□ 0.4
Clk4O35493 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.55■□□□□ 0.4
Clk4O35493 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Clk4O35493 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
Clk4O35493 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.55■□□□□ 0.4
Clk4O35493 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk4O35493 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk4O35493 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk4O35493 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk4O35493 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk4O35493 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.54■□□□□ 0.4
Clk4O35493 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms