Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cx3cl1O35188 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cx3cl1O35188 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Gm5784-201ENSMUST00000179344 2478 ntBASIC17.25■□□□□ 0.35
Cx3cl1O35188 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Gm29257-201ENSMUST00000186115 639 ntBASIC17.25■□□□□ 0.35
Cx3cl1O35188 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.25■□□□□ 0.35
Cx3cl1O35188 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cx3cl1O35188 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Gm13148-201ENSMUST00000118892 745 ntBASIC17.24■□□□□ 0.35
Cx3cl1O35188 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cx3cl1O35188 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.24■□□□□ 0.35
Cx3cl1O35188 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cx3cl1O35188 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cx3cl1O35188 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.22■□□□□ 0.35
Cx3cl1O35188 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cx3cl1O35188 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.21■□□□□ 0.35
Cx3cl1O35188 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cx3cl1O35188 BC021767-201ENSMUST00000126387 1716 ntBASIC17.21■□□□□ 0.35
Cx3cl1O35188 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cx3cl1O35188 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cx3cl1O35188 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cx3cl1O35188 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cx3cl1O35188 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms