Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shisa8J3QNX5 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Shisa8J3QNX5 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Shisa8J3QNX5 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Gm45906-201ENSMUST00000208911 1430 ntBASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Gm5576-201ENSMUST00000075809 1236 ntBASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.74■□□□□ 0.27
Shisa8J3QNX5 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Rps24-207ENSMUST00000224568 714 ntBASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Shisa8J3QNX5 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 CT030146.1-201ENSMUST00000220919 217 ntBASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Shisa8J3QNX5 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Gm12922-201ENSMUST00000120626 809 ntBASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Flvcr1-202ENSMUST00000191946 1216 ntBASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Gm43137-201ENSMUST00000198052 594 ntBASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Shisa8J3QNX5 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Shisa8J3QNX5 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shisa8J3QNX5 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Shisa8J3QNX5 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms