Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-3J3QMG8 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav13d-3J3QMG8 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trav13d-3J3QMG8 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Gm27405-201ENSMUST00000184201 112 ntBASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav13d-3J3QMG8 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Fam105a-203ENSMUST00000226170 3043 ntBASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Gm9194-201ENSMUST00000220749 1447 ntBASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Gm6365-201ENSMUST00000054711 744 ntBASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-3J3QMG8 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trav13d-3J3QMG8 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Gm38308-201ENSMUST00000194934 1809 ntBASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Gm42555-201ENSMUST00000199304 1039 ntBASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-3J3QMG8 Gm5953-201ENSMUST00000220644 2616 ntBASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms