Protein–RNA interactions for Protein: E0CXC2

Gm28043, E3 ubiquitin-protein ligase RNF8, mousemouse

Predictions only

Length 719 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm28043E0CXC2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Gm28043E0CXC2 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Gm28043E0CXC2 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Gm28043E0CXC2 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.41■□□□□ 0.54
Gm28043E0CXC2 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Gm28043E0CXC2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Gm28043E0CXC2 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Gm28043E0CXC2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.39■□□□□ 0.54
Gm28043E0CXC2 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Gm15039-201ENSMUST00000118914 875 ntBASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Gm28043E0CXC2 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Gm28043E0CXC2 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Gm28043E0CXC2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Gm28043E0CXC2 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Gm28043E0CXC2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
Gm28043E0CXC2 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.36■□□□□ 0.53
Gm28043E0CXC2 CT030146.1-201ENSMUST00000220919 217 ntBASIC18.36■□□□□ 0.53
Gm28043E0CXC2 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Gm28043E0CXC2 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Gm28043E0CXC2 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Gm28043E0CXC2 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Gm28043E0CXC2 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Gm28043E0CXC2 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms