Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
Vps53Q8CCB4 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
Vps53Q8CCB4 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.18
Vps53Q8CCB4 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC28.64■■■□□ 2.18
Vps53Q8CCB4 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
Vps53Q8CCB4 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.17
Vps53Q8CCB4 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Vps53Q8CCB4 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Vps53Q8CCB4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Vps53Q8CCB4 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Vps53Q8CCB4 Gm9905-201ENSMUST00000065740 1845 ntBASIC28.62■■■□□ 2.17
Vps53Q8CCB4 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Vps53Q8CCB4 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Vps53Q8CCB4 Gm6345-201ENSMUST00000180378 1691 ntBASIC28.59■■■□□ 2.17
Vps53Q8CCB4 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Vps53Q8CCB4 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Vps53Q8CCB4 Gm6206-201ENSMUST00000133472 2199 ntBASIC28.57■■■□□ 2.16
Vps53Q8CCB4 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
Vps53Q8CCB4 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC28.56■■■□□ 2.16
Vps53Q8CCB4 Gm5987-201ENSMUST00000196433 1151 ntBASIC28.56■■■□□ 2.16
Vps53Q8CCB4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
Vps53Q8CCB4 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
Vps53Q8CCB4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Vps53Q8CCB4 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Vps53Q8CCB4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
Vps53Q8CCB4 Gm30346-201ENSMUST00000218641 1699 ntBASIC28.54■■■□□ 2.16
Vps53Q8CCB4 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Vps53Q8CCB4 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
Vps53Q8CCB4 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Vps53Q8CCB4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
Vps53Q8CCB4 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
Vps53Q8CCB4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
Vps53Q8CCB4 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.49■■■□□ 2.15
Vps53Q8CCB4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Vps53Q8CCB4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Vps53Q8CCB4 Gm43445-201ENSMUST00000198564 2091 ntBASIC28.47■■■□□ 2.15
Vps53Q8CCB4 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
Vps53Q8CCB4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Vps53Q8CCB4 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Vps53Q8CCB4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Vps53Q8CCB4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Vps53Q8CCB4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Vps53Q8CCB4 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Vps53Q8CCB4 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC28.42■■■□□ 2.14
Vps53Q8CCB4 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC28.41■■■□□ 2.14
Vps53Q8CCB4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Vps53Q8CCB4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Vps53Q8CCB4 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
Vps53Q8CCB4 Gm9939-201ENSMUST00000067161 1154 ntBASIC28.4■■■□□ 2.14
Vps53Q8CCB4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Vps53Q8CCB4 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC28.39■■■□□ 2.14
Vps53Q8CCB4 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
Vps53Q8CCB4 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC28.39■■■□□ 2.14
Vps53Q8CCB4 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
Vps53Q8CCB4 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Vps53Q8CCB4 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC28.36■■■□□ 2.13
Vps53Q8CCB4 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Vps53Q8CCB4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Vps53Q8CCB4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Vps53Q8CCB4 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
Vps53Q8CCB4 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Vps53Q8CCB4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
Vps53Q8CCB4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Vps53Q8CCB4 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC28.31■■■□□ 2.12
Vps53Q8CCB4 Gm8503-201ENSMUST00000118131 455 ntBASIC28.3■■■□□ 2.12
Vps53Q8CCB4 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
Vps53Q8CCB4 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Vps53Q8CCB4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Vps53Q8CCB4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Vps53Q8CCB4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Vps53Q8CCB4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Vps53Q8CCB4 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Vps53Q8CCB4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Vps53Q8CCB4 Gm43863-201ENSMUST00000203822 1192 ntBASIC28.25■■■□□ 2.11
Vps53Q8CCB4 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Vps53Q8CCB4 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Vps53Q8CCB4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Vps53Q8CCB4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Vps53Q8CCB4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Vps53Q8CCB4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Vps53Q8CCB4 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC28.21■■■□□ 2.11
Vps53Q8CCB4 Gm6821-201ENSMUST00000107540 542 ntBASIC28.2■■■□□ 2.1
Vps53Q8CCB4 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Vps53Q8CCB4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Vps53Q8CCB4 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC28.15■■■□□ 2.1
Vps53Q8CCB4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC28.14■■■□□ 2.1
Vps53Q8CCB4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC28.14■■■□□ 2.1
Vps53Q8CCB4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Vps53Q8CCB4 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Vps53Q8CCB4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
Vps53Q8CCB4 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC28.13■■■□□ 2.09
Vps53Q8CCB4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Vps53Q8CCB4 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Vps53Q8CCB4 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC28.12■■■□□ 2.09
Vps53Q8CCB4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
Vps53Q8CCB4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC28.11■■■□□ 2.09
Vps53Q8CCB4 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Vps53Q8CCB4 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Vps53Q8CCB4 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Vps53Q8CCB4 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms