Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Trub1Q8C0D0 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Trub1Q8C0D0 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Trub1Q8C0D0 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Trub1Q8C0D0 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC25.76■■□□□ 1.71
Trub1Q8C0D0 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Trub1Q8C0D0 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Trub1Q8C0D0 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Trub1Q8C0D0 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC25.74■■□□□ 1.71
Trub1Q8C0D0 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC25.74■■□□□ 1.71
Trub1Q8C0D0 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
Trub1Q8C0D0 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Trub1Q8C0D0 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC25.73■■□□□ 1.71
Trub1Q8C0D0 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Trub1Q8C0D0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
Trub1Q8C0D0 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Trub1Q8C0D0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trub1Q8C0D0 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trub1Q8C0D0 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC25.7■■□□□ 1.7
Trub1Q8C0D0 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Trub1Q8C0D0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Trub1Q8C0D0 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trub1Q8C0D0 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Trub1Q8C0D0 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC25.68■■□□□ 1.7
Trub1Q8C0D0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Trub1Q8C0D0 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC25.66■■□□□ 1.7
Trub1Q8C0D0 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Trub1Q8C0D0 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Trub1Q8C0D0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Trub1Q8C0D0 Amer2-203ENSMUST00000225247 2662 ntBASIC25.65■■□□□ 1.7
Trub1Q8C0D0 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC25.64■■□□□ 1.7
Trub1Q8C0D0 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Trub1Q8C0D0 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Trub1Q8C0D0 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC25.62■■□□□ 1.69
Trub1Q8C0D0 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC25.62■■□□□ 1.69
Trub1Q8C0D0 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trub1Q8C0D0 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trub1Q8C0D0 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Trub1Q8C0D0 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trub1Q8C0D0 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trub1Q8C0D0 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trub1Q8C0D0 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trub1Q8C0D0 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Trub1Q8C0D0 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Trub1Q8C0D0 Zfp131-205ENSMUST00000223812 663 ntBASIC25.55■■□□□ 1.68
Trub1Q8C0D0 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Trub1Q8C0D0 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Trub1Q8C0D0 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Trub1Q8C0D0 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Trub1Q8C0D0 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
Trub1Q8C0D0 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Trub1Q8C0D0 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC25.52■■□□□ 1.68
Trub1Q8C0D0 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC25.52■■□□□ 1.68
Trub1Q8C0D0 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trub1Q8C0D0 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Trub1Q8C0D0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Trub1Q8C0D0 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
Trub1Q8C0D0 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Trub1Q8C0D0 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Trub1Q8C0D0 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trub1Q8C0D0 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trub1Q8C0D0 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC25.46■■□□□ 1.67
Trub1Q8C0D0 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Trub1Q8C0D0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC25.45■■□□□ 1.66
Trub1Q8C0D0 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Trub1Q8C0D0 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Trub1Q8C0D0 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
Trub1Q8C0D0 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC25.44■■□□□ 1.66
Trub1Q8C0D0 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
Trub1Q8C0D0 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Trub1Q8C0D0 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC25.44■■□□□ 1.66
Trub1Q8C0D0 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC25.42■■□□□ 1.66
Trub1Q8C0D0 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Trub1Q8C0D0 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trub1Q8C0D0 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trub1Q8C0D0 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC25.39■■□□□ 1.66
Trub1Q8C0D0 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
Trub1Q8C0D0 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trub1Q8C0D0 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
Trub1Q8C0D0 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Trub1Q8C0D0 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
Trub1Q8C0D0 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Trub1Q8C0D0 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Trub1Q8C0D0 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Trub1Q8C0D0 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trub1Q8C0D0 Tdp2-203ENSMUST00000223804 1136 ntBASIC25.36■■□□□ 1.65
Trub1Q8C0D0 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Trub1Q8C0D0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
Trub1Q8C0D0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC25.35■■□□□ 1.65
Trub1Q8C0D0 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC25.34■■□□□ 1.65
Trub1Q8C0D0 Gm9397-201ENSMUST00000200125 605 ntBASIC25.34■■□□□ 1.65
Trub1Q8C0D0 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Trub1Q8C0D0 Gm43863-201ENSMUST00000203822 1192 ntBASIC25.32■■□□□ 1.64
Trub1Q8C0D0 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trub1Q8C0D0 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trub1Q8C0D0 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trub1Q8C0D0 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trub1Q8C0D0 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC25.31■■□□□ 1.64
Trub1Q8C0D0 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC25.31■■□□□ 1.64
Trub1Q8C0D0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 79.3 ms