Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC30.9■■■□□ 2.54
Trim27Q62158 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC30.89■■■□□ 2.53
Trim27Q62158 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
Trim27Q62158 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Trim27Q62158 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Trim27Q62158 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
Trim27Q62158 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Trim27Q62158 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Trim27Q62158 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC30.83■■■□□ 2.53
Trim27Q62158 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
Trim27Q62158 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC30.82■■■□□ 2.52
Trim27Q62158 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Trim27Q62158 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Trim27Q62158 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Trim27Q62158 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC30.8■■■□□ 2.52
Trim27Q62158 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC30.8■■■□□ 2.52
Trim27Q62158 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Trim27Q62158 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Trim27Q62158 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Trim27Q62158 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Trim27Q62158 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Trim27Q62158 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC30.78■■■□□ 2.52
Trim27Q62158 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Trim27Q62158 Zfp131-205ENSMUST00000223812 663 ntBASIC30.76■■■□□ 2.51
Trim27Q62158 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Trim27Q62158 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Trim27Q62158 Amer2-203ENSMUST00000225247 2662 ntBASIC30.75■■■□□ 2.51
Trim27Q62158 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Trim27Q62158 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Trim27Q62158 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC30.73■■■□□ 2.51
Trim27Q62158 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC30.72■■■□□ 2.51
Trim27Q62158 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Trim27Q62158 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC30.71■■■□□ 2.51
Trim27Q62158 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Trim27Q62158 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Trim27Q62158 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Trim27Q62158 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Trim27Q62158 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Trim27Q62158 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC30.69■■■□□ 2.5
Trim27Q62158 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Trim27Q62158 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Trim27Q62158 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Trim27Q62158 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Trim27Q62158 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Trim27Q62158 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC30.63■■■□□ 2.49
Trim27Q62158 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Trim27Q62158 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Trim27Q62158 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Trim27Q62158 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC30.6■■■□□ 2.49
Trim27Q62158 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Trim27Q62158 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim27Q62158 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim27Q62158 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim27Q62158 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.58■■■□□ 2.49
Trim27Q62158 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Trim27Q62158 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC30.57■■■□□ 2.48
Trim27Q62158 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.48
Trim27Q62158 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Trim27Q62158 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Trim27Q62158 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC30.54■■■□□ 2.48
Trim27Q62158 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
Trim27Q62158 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Trim27Q62158 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Trim27Q62158 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Trim27Q62158 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
Trim27Q62158 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Trim27Q62158 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.5■■■□□ 2.47
Trim27Q62158 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Trim27Q62158 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Trim27Q62158 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC30.47■■■□□ 2.47
Trim27Q62158 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC30.46■■■□□ 2.47
Trim27Q62158 Gm9397-201ENSMUST00000200125 605 ntBASIC30.46■■■□□ 2.47
Trim27Q62158 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
Trim27Q62158 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Trim27Q62158 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Trim27Q62158 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.46
Trim27Q62158 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC30.45■■■□□ 2.46
Trim27Q62158 Tdp2-203ENSMUST00000223804 1136 ntBASIC30.43■■■□□ 2.46
Trim27Q62158 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Trim27Q62158 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC30.43■■■□□ 2.46
Trim27Q62158 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
Trim27Q62158 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
Trim27Q62158 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Trim27Q62158 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC30.42■■■□□ 2.46
Trim27Q62158 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
Trim27Q62158 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Trim27Q62158 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC30.41■■■□□ 2.46
Trim27Q62158 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Trim27Q62158 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC30.4■■■□□ 2.46
Trim27Q62158 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Trim27Q62158 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
Trim27Q62158 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim27Q62158 Gm43863-201ENSMUST00000203822 1192 ntBASIC30.38■■■□□ 2.45
Trim27Q62158 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
Trim27Q62158 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Trim27Q62158 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC30.35■■■□□ 2.45
Trim27Q62158 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Trim27Q62158 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim27Q62158 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim27Q62158 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC30.33■■■□□ 2.45
Retrieved 100 of 76,532 protein–RNA pairs in 97.6 ms