Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb3O54879 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20.37■□□□□ 0.85
Hmgb3O54879 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb3O54879 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb3O54879 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Hmgb3O54879 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb3O54879 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb3O54879 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Hmgb3O54879 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmgb3O54879 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmgb3O54879 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb3O54879 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Hmgb3O54879 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb3O54879 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmgb3O54879 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb3O54879 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Hmgb3O54879 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
Hmgb3O54879 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb3O54879 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.31■□□□□ 0.84
Hmgb3O54879 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmgb3O54879 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.31■□□□□ 0.84
Hmgb3O54879 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Hmgb3O54879 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Hmgb3O54879 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.29■□□□□ 0.84
Hmgb3O54879 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Hmgb3O54879 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.28■□□□□ 0.84
Hmgb3O54879 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb3O54879 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb3O54879 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Hmgb3O54879 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb3O54879 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.26■□□□□ 0.83
Hmgb3O54879 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb3O54879 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb3O54879 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb3O54879 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb3O54879 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb3O54879 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb3O54879 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.23■□□□□ 0.83
Hmgb3O54879 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb3O54879 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb3O54879 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Hmgb3O54879 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Hmgb3O54879 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.22■□□□□ 0.83
Hmgb3O54879 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.22■□□□□ 0.83
Hmgb3O54879 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Hmgb3O54879 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
Hmgb3O54879 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmgb3O54879 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.2■□□□□ 0.82
Hmgb3O54879 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC20.19■□□□□ 0.82
Hmgb3O54879 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb3O54879 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb3O54879 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb3O54879 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmgb3O54879 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Hmgb3O54879 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb3O54879 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb3O54879 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb3O54879 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb3O54879 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb3O54879 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb3O54879 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Hmgb3O54879 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb3O54879 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
Hmgb3O54879 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Hmgb3O54879 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb3O54879 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Hmgb3O54879 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb3O54879 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb3O54879 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb3O54879 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb3O54879 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb3O54879 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb3O54879 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Hmgb3O54879 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
Hmgb3O54879 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb3O54879 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb3O54879 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb3O54879 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb3O54879 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Hmgb3O54879 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Hmgb3O54879 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hmgb3O54879 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Hmgb3O54879 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Hmgb3O54879 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Hmgb3O54879 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb3O54879 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb3O54879 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb3O54879 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb3O54879 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.09■□□□□ 0.81
Hmgb3O54879 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Hmgb3O54879 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Hmgb3O54879 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Hmgb3O54879 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Hmgb3O54879 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Hmgb3O54879 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Hmgb3O54879 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb3O54879 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.07■□□□□ 0.8
Hmgb3O54879 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb3O54879 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Hmgb3O54879 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms