Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Trav1A0A075B5Z4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Trav1A0A075B5Z4 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC23.23■■□□□ 1.31
Trav1A0A075B5Z4 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Trav1A0A075B5Z4 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Trav1A0A075B5Z4 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Trav1A0A075B5Z4 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Trav1A0A075B5Z4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC23.22■■□□□ 1.31
Trav1A0A075B5Z4 Gm16148-201ENSMUST00000119653 893 ntBASIC23.21■■□□□ 1.31
Trav1A0A075B5Z4 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Trav1A0A075B5Z4 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC23.2■■□□□ 1.3
Trav1A0A075B5Z4 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Trav1A0A075B5Z4 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trav1A0A075B5Z4 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trav1A0A075B5Z4 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trav1A0A075B5Z4 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
Trav1A0A075B5Z4 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Trav1A0A075B5Z4 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC23.18■■□□□ 1.3
Trav1A0A075B5Z4 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trav1A0A075B5Z4 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trav1A0A075B5Z4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav1A0A075B5Z4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Trav1A0A075B5Z4 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav1A0A075B5Z4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Trav1A0A075B5Z4 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav1A0A075B5Z4 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trav1A0A075B5Z4 Fezf2-202ENSMUST00000224023 1917 ntBASIC23.15■■□□□ 1.3
Trav1A0A075B5Z4 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trav1A0A075B5Z4 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Trav1A0A075B5Z4 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Trav1A0A075B5Z4 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trav1A0A075B5Z4 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Trav1A0A075B5Z4 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC23.11■■□□□ 1.29
Trav1A0A075B5Z4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Trav1A0A075B5Z4 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trav1A0A075B5Z4 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC23.11■■□□□ 1.29
Trav1A0A075B5Z4 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Trav1A0A075B5Z4 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav1A0A075B5Z4 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav1A0A075B5Z4 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
Trav1A0A075B5Z4 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC23.08■■□□□ 1.29
Trav1A0A075B5Z4 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Trav1A0A075B5Z4 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Trav1A0A075B5Z4 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trav1A0A075B5Z4 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trav1A0A075B5Z4 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
Trav1A0A075B5Z4 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trav1A0A075B5Z4 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Trav1A0A075B5Z4 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC23.04■■□□□ 1.28
Trav1A0A075B5Z4 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trav1A0A075B5Z4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trav1A0A075B5Z4 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trav1A0A075B5Z4 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Trav1A0A075B5Z4 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC23.02■■□□□ 1.28
Trav1A0A075B5Z4 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trav1A0A075B5Z4 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trav1A0A075B5Z4 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Trav1A0A075B5Z4 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trav1A0A075B5Z4 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
Trav1A0A075B5Z4 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trav1A0A075B5Z4 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Trav1A0A075B5Z4 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Trav1A0A075B5Z4 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Trav1A0A075B5Z4 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
Trav1A0A075B5Z4 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav1A0A075B5Z4 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav1A0A075B5Z4 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav1A0A075B5Z4 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Trav1A0A075B5Z4 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trav1A0A075B5Z4 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Trav1A0A075B5Z4 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC22.94■■□□□ 1.26
Trav1A0A075B5Z4 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trav1A0A075B5Z4 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trav1A0A075B5Z4 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trav1A0A075B5Z4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC22.93■■□□□ 1.26
Trav1A0A075B5Z4 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Trav1A0A075B5Z4 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Trav1A0A075B5Z4 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Trav1A0A075B5Z4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Trav1A0A075B5Z4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav1A0A075B5Z4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav1A0A075B5Z4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Trav1A0A075B5Z4 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav1A0A075B5Z4 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Trav1A0A075B5Z4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Trav1A0A075B5Z4 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Trav1A0A075B5Z4 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC22.88■■□□□ 1.25
Trav1A0A075B5Z4 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Trav1A0A075B5Z4 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trav1A0A075B5Z4 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Trav1A0A075B5Z4 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trav1A0A075B5Z4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22.85■■□□□ 1.25
Trav1A0A075B5Z4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC22.84■■□□□ 1.25
Trav1A0A075B5Z4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trav1A0A075B5Z4 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trav1A0A075B5Z4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Trav1A0A075B5Z4 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Trav1A0A075B5Z4 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC22.82■■□□□ 1.24
Trav1A0A075B5Z4 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trav1A0A075B5Z4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms