Protein–RNA interactions for Protein: Q9ES00

Ube4b, Ubiquitin conjugation factor E4 B, mousemouse

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4bQ9ES00 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Ube4bQ9ES00 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube4bQ9ES00 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.74■□□□□ 0.43
Ube4bQ9ES00 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ube4bQ9ES00 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Ube4bQ9ES00 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Ube4bQ9ES00 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Ube4bQ9ES00 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ube4bQ9ES00 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Ube4bQ9ES00 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ube4bQ9ES00 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ube4bQ9ES00 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ube4bQ9ES00 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC17.7■□□□□ 0.42
Ube4bQ9ES00 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC17.7■□□□□ 0.42
Ube4bQ9ES00 Gm9870-201ENSMUST00000063874 645 ntBASIC17.7■□□□□ 0.42
Ube4bQ9ES00 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Ube4bQ9ES00 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ube4bQ9ES00 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Mir6236-201ENSMUST00000184437 123 ntBASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Gm9959-201ENSMUST00000068277 390 ntBASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.69■□□□□ 0.42
Ube4bQ9ES00 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ube4bQ9ES00 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 AC093043.1-201ENSMUST00000226700 898 ntBASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Gm7856-201ENSMUST00000117514 1493 ntBASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ube4bQ9ES00 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ube4bQ9ES00 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ube4bQ9ES00 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ube4bQ9ES00 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Ube4bQ9ES00 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ube4bQ9ES00 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms