Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Use1Q9CQ56 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.45■□□□□ 0.38
Use1Q9CQ56 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.45■□□□□ 0.38
Use1Q9CQ56 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Use1Q9CQ56 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Use1Q9CQ56 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Use1Q9CQ56 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Use1Q9CQ56 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Use1Q9CQ56 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.44■□□□□ 0.38
Use1Q9CQ56 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Use1Q9CQ56 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Use1Q9CQ56 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Use1Q9CQ56 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.44■□□□□ 0.38
Use1Q9CQ56 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
Use1Q9CQ56 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
Use1Q9CQ56 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Use1Q9CQ56 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Use1Q9CQ56 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Use1Q9CQ56 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Use1Q9CQ56 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Use1Q9CQ56 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.42■□□□□ 0.38
Use1Q9CQ56 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Gm40848-201ENSMUST00000221998 324 ntBASIC17.42■□□□□ 0.38
Use1Q9CQ56 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Use1Q9CQ56 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.42■□□□□ 0.38
Use1Q9CQ56 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.41■□□□□ 0.38
Use1Q9CQ56 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Gm6139-201ENSMUST00000079261 882 ntBASIC17.41■□□□□ 0.38
Use1Q9CQ56 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Use1Q9CQ56 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.4■□□□□ 0.38
Use1Q9CQ56 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC17.4■□□□□ 0.38
Use1Q9CQ56 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Grk6-206ENSMUST00000224995 2971 ntBASIC17.4■□□□□ 0.38
Use1Q9CQ56 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Use1Q9CQ56 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Use1Q9CQ56 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Use1Q9CQ56 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Use1Q9CQ56 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Use1Q9CQ56 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Use1Q9CQ56 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms