Protein–RNA interactions for Protein: Q91XX8

Pcdhgb1, Protocadherin gamma B1, mousemouse

Predictions only

Length 918 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb1Q91XX8 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Pcdhgb1Q91XX8 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Gm27275-201ENSMUST00000184318 272 ntBASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Pcdhgb1Q91XX8 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Gm12896-201ENSMUST00000118430 226 ntBASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Gm22240-201ENSMUST00000175225 82 ntBASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Trmt13-210ENSMUST00000198454 880 ntBASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Pcdhgb1Q91XX8 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Gm13168-201ENSMUST00000121771 632 ntBASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Pcdhgb1Q91XX8 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Pcdhgb1Q91XX8 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb1Q91XX8 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.15■□□□□ 0.66
Pcdhgb1Q91XX8 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.15■□□□□ 0.66
Pcdhgb1Q91XX8 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb1Q91XX8 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Pcdhgb1Q91XX8 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Pcdhgb1Q91XX8 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Pcdhgb1Q91XX8 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Gm8520-201ENSMUST00000186517 868 ntBASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Pcdhgb1Q91XX8 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Pcdhgb1Q91XX8 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Pcdhgb1Q91XX8 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Pcdhgb1Q91XX8 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Pcdhgb1Q91XX8 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Pcdhgb1Q91XX8 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Pcdhgb1Q91XX8 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Pcdhgb1Q91XX8 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb1Q91XX8 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb1Q91XX8 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Pcdhgb1Q91XX8 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.11■□□□□ 0.65
Pcdhgb1Q91XX8 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Pcdhgb1Q91XX8 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.1■□□□□ 0.65
Pcdhgb1Q91XX8 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms