Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp7Q8R1T1 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Chmp7Q8R1T1 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp7Q8R1T1 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp7Q8R1T1 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp7Q8R1T1 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp7Q8R1T1 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
Chmp7Q8R1T1 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 Mtag2-201ENSMUST00000058665 714 ntBASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 Zfp783-201ENSMUST00000095946 670 ntBASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Chmp7Q8R1T1 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Gm29994-201ENSMUST00000195495 1193 ntBASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp7Q8R1T1 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp7Q8R1T1 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Chmp7Q8R1T1 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Chmp7Q8R1T1 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Chmp7Q8R1T1 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Chmp7Q8R1T1 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC23.64■■□□□ 1.38
Chmp7Q8R1T1 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
Chmp7Q8R1T1 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC23.64■■□□□ 1.38
Chmp7Q8R1T1 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC23.64■■□□□ 1.38
Chmp7Q8R1T1 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Chmp7Q8R1T1 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC23.64■■□□□ 1.37
Chmp7Q8R1T1 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
Chmp7Q8R1T1 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Chmp7Q8R1T1 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
Chmp7Q8R1T1 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Chmp7Q8R1T1 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Chmp7Q8R1T1 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Chmp7Q8R1T1 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
Chmp7Q8R1T1 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Chmp7Q8R1T1 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
Chmp7Q8R1T1 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Chmp7Q8R1T1 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC23.63■■□□□ 1.37
Chmp7Q8R1T1 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Chmp7Q8R1T1 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Mir5122-201ENSMUST00000175004 89 ntBASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp7Q8R1T1 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 Gm10138-203ENSMUST00000206952 366 ntBASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp7Q8R1T1 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Chmp7Q8R1T1 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Chmp7Q8R1T1 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Chmp7Q8R1T1 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC23.6■■□□□ 1.37
Chmp7Q8R1T1 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Chmp7Q8R1T1 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Chmp7Q8R1T1 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC23.6■■□□□ 1.37
Chmp7Q8R1T1 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms