Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC25.45■■□□□ 1.66
Usp40Q8BWR4 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC25.44■■□□□ 1.66
Usp40Q8BWR4 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Usp40Q8BWR4 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
Usp40Q8BWR4 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC25.44■■□□□ 1.66
Usp40Q8BWR4 Gm37805-201ENSMUST00000192612 1094 ntBASIC25.44■■□□□ 1.66
Usp40Q8BWR4 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Usp40Q8BWR4 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Usp40Q8BWR4 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
Usp40Q8BWR4 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Usp40Q8BWR4 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Usp40Q8BWR4 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Usp40Q8BWR4 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Usp40Q8BWR4 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Usp40Q8BWR4 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Usp40Q8BWR4 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Usp40Q8BWR4 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Usp40Q8BWR4 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Usp40Q8BWR4 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Usp40Q8BWR4 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
Usp40Q8BWR4 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
Usp40Q8BWR4 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
Usp40Q8BWR4 Gm9484-201ENSMUST00000195892 1159 ntBASIC25.41■■□□□ 1.66
Usp40Q8BWR4 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
Usp40Q8BWR4 Gm43545-201ENSMUST00000196765 2779 ntBASIC25.41■■□□□ 1.66
Usp40Q8BWR4 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Usp40Q8BWR4 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Usp40Q8BWR4 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Usp40Q8BWR4 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Usp40Q8BWR4 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
Usp40Q8BWR4 Gm15853-202ENSMUST00000195518 2041 ntBASIC25.39■■□□□ 1.66
Usp40Q8BWR4 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Usp40Q8BWR4 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Usp40Q8BWR4 AC158538.1-201ENSMUST00000225870 294 ntBASIC25.39■■□□□ 1.66
Usp40Q8BWR4 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC25.39■■□□□ 1.65
Usp40Q8BWR4 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Usp40Q8BWR4 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC25.38■■□□□ 1.65
Usp40Q8BWR4 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Usp40Q8BWR4 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC25.38■■□□□ 1.65
Usp40Q8BWR4 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Usp40Q8BWR4 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Usp40Q8BWR4 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Usp40Q8BWR4 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Usp40Q8BWR4 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Gm38285-201ENSMUST00000192928 922 ntBASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Usp40Q8BWR4 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Usp40Q8BWR4 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Usp40Q8BWR4 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Usp40Q8BWR4 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Usp40Q8BWR4 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC25.35■■□□□ 1.65
Usp40Q8BWR4 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC25.35■■□□□ 1.65
Usp40Q8BWR4 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC25.35■■□□□ 1.65
Usp40Q8BWR4 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Gm37055-201ENSMUST00000191866 133 ntBASIC25.34■■□□□ 1.65
Usp40Q8BWR4 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms