Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Gm27011-201ENSMUST00000182352 972 ntBASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig4Q8BTF7 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 AC112142.1-201ENSMUST00000228796 918 ntBASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig4Q8BTF7 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Gm20049-201ENSMUST00000219950 730 ntBASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.52■□□□□ 0.72
Lig4Q8BTF7 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Lig4Q8BTF7 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Gm12527-201ENSMUST00000117967 564 ntBASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Gm44549-201ENSMUST00000208351 577 ntBASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Lig4Q8BTF7 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lig4Q8BTF7 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lig4Q8BTF7 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.48■□□□□ 0.71
Lig4Q8BTF7 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms