Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb4Q6P8W9 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Gm12896-201ENSMUST00000118430 226 ntBASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.25■□□□□ 0.67
Hmgb4Q6P8W9 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.24■□□□□ 0.67
Hmgb4Q6P8W9 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb4Q6P8W9 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb4Q6P8W9 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb4Q6P8W9 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms