Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Gm37055-201ENSMUST00000191866 133 ntBASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Shkbp1Q6P7W2 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Krtap5-1-202ENSMUST00000188274 742 ntBASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Shkbp1Q6P7W2 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 Gm15565-201ENSMUST00000118890 427 ntBASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Shkbp1Q6P7W2 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Shkbp1Q6P7W2 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Shkbp1Q6P7W2 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Shkbp1Q6P7W2 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Gm13836-201ENSMUST00000121159 501 ntBASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Shkbp1Q6P7W2 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Shkbp1Q6P7W2 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms