Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Upf3bQ3ULL6 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.74■□□□□ 0.75
Upf3bQ3ULL6 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Upf3bQ3ULL6 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Gm12933-201ENSMUST00000120203 872 ntBASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Upf3bQ3ULL6 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Mir5133-201ENSMUST00000174955 77 ntBASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Upf3bQ3ULL6 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Upf3bQ3ULL6 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Upf3bQ3ULL6 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms