Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 AC099934.2-201ENSMUST00000196389 70 ntBASIC19■□□□□ 0.63
Msx3P70354 AC156953.1-201ENSMUST00000196953 70 ntBASIC19■□□□□ 0.63
Msx3P70354 AC157822.2-201ENSMUST00000200291 70 ntBASIC19■□□□□ 0.63
Msx3P70354 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19■□□□□ 0.63
Msx3P70354 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19■□□□□ 0.63
Msx3P70354 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msx3P70354 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msx3P70354 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msx3P70354 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19■□□□□ 0.63
Msx3P70354 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msx3P70354 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Msx3P70354 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Msx3P70354 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.99■□□□□ 0.63
Msx3P70354 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Msx3P70354 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Msx3P70354 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msx3P70354 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx3P70354 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx3P70354 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx3P70354 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.98■□□□□ 0.63
Msx3P70354 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.98■□□□□ 0.63
Msx3P70354 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msx3P70354 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.97■□□□□ 0.63
Msx3P70354 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
Msx3P70354 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC18.97■□□□□ 0.63
Msx3P70354 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.97■□□□□ 0.63
Msx3P70354 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Gm8309-201ENSMUST00000206627 1448 ntBASIC18.97■□□□□ 0.63
Msx3P70354 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
Msx3P70354 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Msx3P70354 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
Msx3P70354 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Msx3P70354 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Msx3P70354 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Msx3P70354 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.96■□□□□ 0.63
Msx3P70354 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx3P70354 Gm10655-201ENSMUST00000098658 1397 ntBASIC18.95■□□□□ 0.62
Msx3P70354 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx3P70354 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.95■□□□□ 0.62
Msx3P70354 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
Msx3P70354 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.95■□□□□ 0.62
Msx3P70354 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx3P70354 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx3P70354 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Msx3P70354 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC18.94■□□□□ 0.62
Msx3P70354 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.94■□□□□ 0.62
Msx3P70354 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.94■□□□□ 0.62
Msx3P70354 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.94■□□□□ 0.62
Msx3P70354 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Msx3P70354 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Msx3P70354 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Msx3P70354 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Msx3P70354 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Msx3P70354 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
Msx3P70354 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms