Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Tpm1P58771 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.58■□□□□ 0.89
Tpm1P58771 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Tpm1P58771 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.58■□□□□ 0.88
Tpm1P58771 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Tpm1P58771 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Tpm1P58771 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Tpm1P58771 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.57■□□□□ 0.88
Tpm1P58771 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.57■□□□□ 0.88
Tpm1P58771 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
Tpm1P58771 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Tpm1P58771 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Tpm1P58771 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tpm1P58771 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Tpm1P58771 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Tpm1P58771 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tpm1P58771 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tpm1P58771 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tpm1P58771 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tpm1P58771 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Tpm1P58771 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tpm1P58771 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tpm1P58771 Rps24-207ENSMUST00000224568 714 ntBASIC20.56■□□□□ 0.88
Tpm1P58771 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tpm1P58771 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.56■□□□□ 0.88
Tpm1P58771 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.55■□□□□ 0.88
Tpm1P58771 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.55■□□□□ 0.88
Tpm1P58771 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Gm14117-201ENSMUST00000122417 843 ntBASIC20.55■□□□□ 0.88
Tpm1P58771 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
Tpm1P58771 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Gm45102-201ENSMUST00000207427 857 ntBASIC20.55■□□□□ 0.88
Tpm1P58771 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Tpm1P58771 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Tpm1P58771 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.55■□□□□ 0.88
Tpm1P58771 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tpm1P58771 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Tpm1P58771 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Tpm1P58771 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tpm1P58771 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Tpm1P58771 Gm12922-201ENSMUST00000120626 809 ntBASIC20.53■□□□□ 0.88
Tpm1P58771 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Tpm1P58771 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Tpm1P58771 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Tpm1P58771 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Tpm1P58771 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Tpm1P58771 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Tpm1P58771 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Tpm1P58771 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.52■□□□□ 0.88
Tpm1P58771 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Tpm1P58771 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Tpm1P58771 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Tpm1P58771 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Tpm1P58771 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Tpm1P58771 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Tpm1P58771 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Tpm1P58771 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Tpm1P58771 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Tpm1P58771 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC20.52■□□□□ 0.87
Tpm1P58771 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Tpm1P58771 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Tpm1P58771 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Tpm1P58771 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
Tpm1P58771 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Tpm1P58771 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Tpm1P58771 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Tpm1P58771 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms