Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.6■□□□□ 0.41
Sox3P53784 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.6■□□□□ 0.41
Sox3P53784 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sox3P53784 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Sox3P53784 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sox3P53784 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Sox3P53784 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Sox3P53784 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Sox3P53784 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Sox3P53784 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Gm5643-201ENSMUST00000117081 966 ntBASIC17.59■□□□□ 0.41
Sox3P53784 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Sox3P53784 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.59■□□□□ 0.41
Sox3P53784 Rab3c-203ENSMUST00000224180 967 ntBASIC17.59■□□□□ 0.41
Sox3P53784 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Sox3P53784 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sox3P53784 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Sox3P53784 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.58■□□□□ 0.41
Sox3P53784 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Sox3P53784 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sox3P53784 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sox3P53784 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sox3P53784 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.58■□□□□ 0.41
Sox3P53784 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sox3P53784 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 Gm27275-201ENSMUST00000184318 272 ntBASIC17.58■□□□□ 0.4
Sox3P53784 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
Sox3P53784 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Sox3P53784 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.58■□□□□ 0.4
Sox3P53784 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sox3P53784 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Sox3P53784 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Sox3P53784 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.57■□□□□ 0.4
Sox3P53784 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Sox3P53784 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sox3P53784 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sox3P53784 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Sox3P53784 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sox3P53784 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sox3P53784 Gm15565-201ENSMUST00000118890 427 ntBASIC17.56■□□□□ 0.4
Sox3P53784 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Sox3P53784 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sox3P53784 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Sox3P53784 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Sox3P53784 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Rarb-207ENSMUST00000225921 2756 ntBASIC17.55■□□□□ 0.4
Sox3P53784 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Sox3P53784 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Sox3P53784 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.55■□□□□ 0.4
Sox3P53784 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.55■□□□□ 0.4
Sox3P53784 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Sox3P53784 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC17.55■□□□□ 0.4
Sox3P53784 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Sox3P53784 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.55■□□□□ 0.4
Sox3P53784 Gm38205-201ENSMUST00000192243 258 ntBASIC17.55■□□□□ 0.4
Sox3P53784 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sox3P53784 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 14 ms