Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.28■□□□□ 0.68
Usp4P35123 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Usp4P35123 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.28■□□□□ 0.68
Usp4P35123 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.28■□□□□ 0.68
Usp4P35123 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.28■□□□□ 0.68
Usp4P35123 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Usp4P35123 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
Usp4P35123 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Usp4P35123 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.28■□□□□ 0.68
Usp4P35123 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp4P35123 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC19.27■□□□□ 0.68
Usp4P35123 Gm7291-201ENSMUST00000199147 382 ntBASIC19.27■□□□□ 0.68
Usp4P35123 Gm40848-201ENSMUST00000221998 324 ntBASIC19.27■□□□□ 0.68
Usp4P35123 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp4P35123 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
Usp4P35123 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp4P35123 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp4P35123 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Usp4P35123 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp4P35123 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp4P35123 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp4P35123 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp4P35123 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.26■□□□□ 0.67
Usp4P35123 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.26■□□□□ 0.67
Usp4P35123 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.26■□□□□ 0.67
Usp4P35123 Gm42569-201ENSMUST00000200539 472 ntBASIC19.26■□□□□ 0.67
Usp4P35123 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp4P35123 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.26■□□□□ 0.67
Usp4P35123 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp4P35123 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.25■□□□□ 0.67
Usp4P35123 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.25■□□□□ 0.67
Usp4P35123 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp4P35123 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp4P35123 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Usp4P35123 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp4P35123 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp4P35123 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp4P35123 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp4P35123 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp4P35123 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Usp4P35123 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp4P35123 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.25■□□□□ 0.67
Usp4P35123 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Usp4P35123 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.24■□□□□ 0.67
Usp4P35123 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
Usp4P35123 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Usp4P35123 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.24■□□□□ 0.67
Usp4P35123 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp4P35123 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.24■□□□□ 0.67
Usp4P35123 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
Usp4P35123 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Usp4P35123 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp4P35123 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp4P35123 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp4P35123 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.23■□□□□ 0.67
Usp4P35123 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp4P35123 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp4P35123 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Usp4P35123 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp4P35123 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp4P35123 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp4P35123 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp4P35123 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.22■□□□□ 0.67
Usp4P35123 Smad6-203ENSMUST00000179458 273 ntBASIC19.22■□□□□ 0.67
Usp4P35123 Gm42642-201ENSMUST00000200683 355 ntBASIC19.22■□□□□ 0.67
Usp4P35123 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms