Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nedd8P29595 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.13■□□□□ 0.33
Nedd8P29595 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Nedd8P29595 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nedd8P29595 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Nedd8P29595 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nedd8P29595 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nedd8P29595 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Nedd8P29595 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nedd8P29595 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nedd8P29595 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nedd8P29595 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nedd8P29595 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Nedd8P29595 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Nedd8P29595 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
Nedd8P29595 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC17.11■□□□□ 0.33
Nedd8P29595 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Nedd8P29595 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Nedd8P29595 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Nedd8P29595 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Nedd8P29595 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Nedd8P29595 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nedd8P29595 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nedd8P29595 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Nedd8P29595 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nedd8P29595 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC17.1■□□□□ 0.33
Nedd8P29595 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Nedd8P29595 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Nedd8P29595 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nedd8P29595 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nedd8P29595 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Nedd8P29595 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Nedd8P29595 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Nedd8P29595 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Nedd8P29595 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.09■□□□□ 0.33
Nedd8P29595 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Nedd8P29595 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Nedd8P29595 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nedd8P29595 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nedd8P29595 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Nedd8P29595 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nedd8P29595 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nedd8P29595 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.33
Nedd8P29595 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Nedd8P29595 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nedd8P29595 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nedd8P29595 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nedd8P29595 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC17.08■□□□□ 0.32
Nedd8P29595 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Nedd8P29595 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nedd8P29595 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Nedd8P29595 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC17.07■□□□□ 0.32
Nedd8P29595 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC17.07■□□□□ 0.32
Nedd8P29595 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nedd8P29595 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Nedd8P29595 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Nedd8P29595 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC17.06■□□□□ 0.32
Nedd8P29595 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Nedd8P29595 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nedd8P29595 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms