Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Mir7075-201ENSMUST00000184187 82 ntBASIC14.84□□□□□ -0.03
Cdx1P18111 Gm10657-201ENSMUST00000193528 1031 ntBASIC14.84□□□□□ -0.03
Cdx1P18111 Gm21168-201ENSMUST00000199646 1096 ntBASIC14.84□□□□□ -0.03
Cdx1P18111 Gm2011-201ENSMUST00000203124 1263 ntBASIC14.84□□□□□ -0.03
Cdx1P18111 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 AC123834.2-201ENSMUST00000224038 2340 ntBASIC14.84□□□□□ -0.03
Cdx1P18111 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Cdx1P18111 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Cdx1P18111 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Cdx1P18111 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Cdx1P18111 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Cdx1P18111 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.03
Cdx1P18111 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC14.83□□□□□ -0.03
Cdx1P18111 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Cdx1P18111 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Cdx1P18111 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC14.83□□□□□ -0.04
Cdx1P18111 Gm43759-201ENSMUST00000196925 1261 ntBASIC14.83□□□□□ -0.04
Cdx1P18111 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Cdx1P18111 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
Cdx1P18111 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Cdx1P18111 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Cdx1P18111 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC14.82□□□□□ -0.04
Cdx1P18111 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC14.82□□□□□ -0.04
Cdx1P18111 Slc35b2-207ENSMUST00000226086 850 ntBASIC14.82□□□□□ -0.04
Cdx1P18111 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Cdx1P18111 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC14.82□□□□□ -0.04
Cdx1P18111 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Cdx1P18111 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC14.82□□□□□ -0.04
Cdx1P18111 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cdx1P18111 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Cdx1P18111 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC14.81□□□□□ -0.04
Cdx1P18111 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC14.81□□□□□ -0.04
Cdx1P18111 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC14.81□□□□□ -0.04
Cdx1P18111 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC14.81□□□□□ -0.04
Cdx1P18111 Gm5576-201ENSMUST00000075809 1236 ntBASIC14.81□□□□□ -0.04
Cdx1P18111 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Cdx1P18111 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC14.81□□□□□ -0.04
Cdx1P18111 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cdx1P18111 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Cdx1P18111 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC14.8□□□□□ -0.04
Cdx1P18111 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC14.8□□□□□ -0.04
Cdx1P18111 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Gm8770-201ENSMUST00000121113 1109 ntBASIC14.8□□□□□ -0.04
Cdx1P18111 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
Cdx1P18111 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC14.8□□□□□ -0.04
Cdx1P18111 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Cdx1P18111 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cdx1P18111 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms