Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chd3B1AR17 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.13■□□□□ 0.49
Chd3B1AR17 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
Chd3B1AR17 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.13■□□□□ 0.49
Chd3B1AR17 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Chd3B1AR17 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Gm8520-201ENSMUST00000186517 868 ntBASIC18.13■□□□□ 0.49
Chd3B1AR17 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chd3B1AR17 Zfp783-201ENSMUST00000095946 670 ntBASIC18.13■□□□□ 0.49
Chd3B1AR17 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Chd3B1AR17 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd3B1AR17 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Chd3B1AR17 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd3B1AR17 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.12■□□□□ 0.49
Chd3B1AR17 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
Chd3B1AR17 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd3B1AR17 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Chd3B1AR17 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd3B1AR17 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd3B1AR17 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd3B1AR17 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Chd3B1AR17 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC18.12■□□□□ 0.49
Chd3B1AR17 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.11■□□□□ 0.49
Chd3B1AR17 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.11■□□□□ 0.49
Chd3B1AR17 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.11■□□□□ 0.49
Chd3B1AR17 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Chd3B1AR17 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.11■□□□□ 0.49
Chd3B1AR17 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd3B1AR17 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.1■□□□□ 0.49
Chd3B1AR17 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.1■□□□□ 0.49
Chd3B1AR17 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.1■□□□□ 0.49
Chd3B1AR17 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd3B1AR17 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd3B1AR17 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Chd3B1AR17 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
Chd3B1AR17 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd3B1AR17 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd3B1AR17 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd3B1AR17 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd3B1AR17 Gm11249-201ENSMUST00000117071 859 ntBASIC18.1■□□□□ 0.49
Chd3B1AR17 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.1■□□□□ 0.49
Chd3B1AR17 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.1■□□□□ 0.49
Chd3B1AR17 Iqck-206ENSMUST00000208658 2891 ntBASIC18.09■□□□□ 0.49
Chd3B1AR17 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd3B1AR17 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.09■□□□□ 0.49
Chd3B1AR17 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd3B1AR17 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd3B1AR17 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd3B1AR17 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC18.09■□□□□ 0.49
Chd3B1AR17 Gm715-201ENSMUST00000117865 831 ntBASIC18.09■□□□□ 0.49
Chd3B1AR17 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd3B1AR17 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd3B1AR17 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd3B1AR17 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd3B1AR17 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Chd3B1AR17 Gm11927-201ENSMUST00000118472 759 ntBASIC18.08■□□□□ 0.49
Chd3B1AR17 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Chd3B1AR17 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.08■□□□□ 0.49
Chd3B1AR17 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Chd3B1AR17 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Chd3B1AR17 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Chd3B1AR17 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.08■□□□□ 0.49
Chd3B1AR17 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Chd3B1AR17 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Chd3B1AR17 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Chd3B1AR17 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Chd3B1AR17 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Chd3B1AR17 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Chd3B1AR17 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Chd3B1AR17 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Chd3B1AR17 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms