Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Gm28659-201ENSMUST00000188013 759 ntBASIC15.12■□□□□ 0.01
Chd6A3KFM7 Gm29518-201ENSMUST00000190858 372 ntBASIC15.12■□□□□ 0.01
Chd6A3KFM7 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC15.12■□□□□ 0.01
Chd6A3KFM7 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Flg-201ENSMUST00000050758 1488 ntBASIC15.11■□□□□ 0.01
Chd6A3KFM7 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Chd6A3KFM7 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
Chd6A3KFM7 AC122428.2-201ENSMUST00000216321 1832 ntBASIC15.11■□□□□ 0.01
Chd6A3KFM7 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC15.11■□□□□ 0.01
Chd6A3KFM7 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd6A3KFM7 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Mir3081-201ENSMUST00000175305 84 ntBASIC15.1■□□□□ 0.01
Chd6A3KFM7 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Chd6A3KFM7 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC15.1■□□□□ 0.01
Chd6A3KFM7 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Chd6A3KFM7 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC15.1■□□□□ 0.01
Chd6A3KFM7 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC15.09■□□□□ 0.01
Chd6A3KFM7 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd6A3KFM7 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
Chd6A3KFM7 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chd6A3KFM7 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chd6A3KFM7 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.08■□□□□ 0.01
Chd6A3KFM7 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chd6A3KFM7 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC15.08■□□□□ 0
Chd6A3KFM7 Gm12504-201ENSMUST00000120860 2231 ntBASIC15.08■□□□□ 0
Chd6A3KFM7 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Chd6A3KFM7 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Chd6A3KFM7 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chd6A3KFM7 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Chd6A3KFM7 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC15.08■□□□□ 0
Chd6A3KFM7 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC15.08■□□□□ 0
Chd6A3KFM7 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Chd6A3KFM7 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd6A3KFM7 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
Chd6A3KFM7 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd6A3KFM7 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Chd6A3KFM7 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chd6A3KFM7 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC15.07■□□□□ 0
Chd6A3KFM7 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC15.07■□□□□ 0
Chd6A3KFM7 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Chd6A3KFM7 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chd6A3KFM7 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd6A3KFM7 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.07■□□□□ 0
Chd6A3KFM7 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Chd6A3KFM7 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd6A3KFM7 Mtag2-201ENSMUST00000058665 714 ntBASIC15.07■□□□□ 0
Chd6A3KFM7 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC15.07■□□□□ 0
Chd6A3KFM7 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd6A3KFM7 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chd6A3KFM7 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Chd6A3KFM7 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.06■□□□□ 0
Chd6A3KFM7 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.06■□□□□ 0
Chd6A3KFM7 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Chd6A3KFM7 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC15.06■□□□□ 0
Chd6A3KFM7 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Chd6A3KFM7 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms