Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Gm12441-201ENSMUST00000121806 588 ntBASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Cpsf3Q9QXK7 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Rab3c-203ENSMUST00000224180 967 ntBASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cpsf3Q9QXK7 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cpsf3Q9QXK7 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cpsf3Q9QXK7 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cpsf3Q9QXK7 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cpsf3Q9QXK7 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cpsf3Q9QXK7 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cpsf3Q9QXK7 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cpsf3Q9QXK7 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cpsf3Q9QXK7 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cpsf3Q9QXK7 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cpsf3Q9QXK7 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cpsf3Q9QXK7 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
Cpsf3Q9QXK7 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.89■□□□□ 0.78
Cpsf3Q9QXK7 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.89■□□□□ 0.77
Cpsf3Q9QXK7 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms