Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Nespas-201ENSMUST00000143738 1083 ntBASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Gm6420-201ENSMUST00000193885 723 ntBASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cdc40Q9DC48 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Cdc40Q9DC48 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Gm13146-201ENSMUST00000118508 780 ntBASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Gm6365-201ENSMUST00000054711 744 ntBASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cdc40Q9DC48 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cdc40Q9DC48 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Gm5408-201ENSMUST00000197998 747 ntBASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cdc40Q9DC48 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Cdc40Q9DC48 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Cdc40Q9DC48 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms