Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Gm7514-201ENSMUST00000209475 934 ntBASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddx56Q9D0R4 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Gm6420-201ENSMUST00000193885 723 ntBASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 AV356131-201ENSMUST00000206201 750 ntBASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddx56Q9D0R4 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Ddx56Q9D0R4 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx56Q9D0R4 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx56Q9D0R4 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx56Q9D0R4 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx56Q9D0R4 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddx56Q9D0R4 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Nespas-201ENSMUST00000143738 1083 ntBASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
Ddx56Q9D0R4 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Gm8495-201ENSMUST00000188740 694 ntBASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
Ddx56Q9D0R4 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.42■□□□□ 0.7
Ddx56Q9D0R4 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 Gm26571-201ENSMUST00000181399 666 ntBASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddx56Q9D0R4 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Gm10849-201ENSMUST00000100397 618 ntBASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms